Updated Comprehensive Guide to Bioinformatics Databases

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Abdul Rehman Ikram

1:45:17

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1 - Introduction

1 - Basic Bioinformatics Quiz.html

1 - Introduction of Biological Databases.mp4

01:44

2 - Types of Biological Databases.mp4

00:41

3 - Difference Between Primary and Secondary Databases.mp4

02:19

2 - Primary Databases

4 - Primary Databases.mp4

00:51

5 - Explaining Primary Databases.mp4

02:58

6 - Explaining Primary Databases 2nd Part.mp4

02:13

7 - Explaining Primary Databases Last Part.mp4

03:40

8 - A Survey of Bioinformatics Database and Software Usage through Mining the Litera.html

3 - Secondary Databases

2 - Databases Quiz.html

9 - Introduction of Secondary Databases.mp4

00:46

10 - Explaining Secondary Databases.mp4

02:51

11 - Explaining Secondary Databases 2nd Part.mp4

04:01

12 - Explaining Secondary Databases 3rd Part.mp4

02:05

13 - Explaining Secondary Databases 4th Part.mp4

02:16

4 - Plant Databases Guide

14 - Plant databases introduction and tools.mp4

06:57

15 - Types of Plant Databases.mp4

02:34

16 - Brassica database.mp4

06:09

17 - Ensembl plants.mp4

02:55

18 - Genome Size in Asteraceae Database.mp4

05:11

19 - National Center for Biotechnology Information.mp4

04:29

20 - Phytozome DOE Joint Genome Institute.mp4

03:19

21 - Plant Genome Data Base Japan A Portal Website for plant Integration.mp4

01:35

22 - cDNA Database.mp4

02:39

23 - rDNA database.mp4

01:58

24 - PTGBase an integrated database to study tandem duplicated genes.mp4

02:08

25 - PlantGDB Genome Browser.mp4

02:21

5 - Literature Databases

26 - Introduction of Literature Databases.mp4

00:46

27 - Explaining Literature Databases.mp4

02:28

28 - Summary.mp4

00:57

6 - File Formats Understanding

29 - Introduction of File Formats.mp4

01:10

30 - Explaining Different File Formats.mp4

04:48

31 - Summary of this Section.mp4

00:37

7 - Comprehensive guide to UCSC Genome Browser

3 - Ucsc Browser Quiz.html

32 - Introduction.mp4

01:13

33 - Searching For Genome.mp4

02:45

34 - Retrieving Corona Virus Genome.mp4

02:58

35 - Summary.mp4

00:45

36 - Introduction of Table Browser.mp4

02:47

37 - Retrieval of Whole Genome Using Table Browser.mp4

02:47

38 - importance of UCSC Browser in Corona Virus Research.mp4

05:00

39 - Summary.mp4

00:42

40 - Visualizing CoronaVirus Sars Genome.mp4

01:16

41 - Visualizing Sars Genome.mp4

04:58

42 - Summary.mp4

00:40

Description

in and out guide to best bioinformatics databases out there being used now a days from basic to specified like genome

What You'll Learn?

You will gain complete understanding on Bioinformatics Databases. From basic to advance concepts.
After this practical course you will confidently choose database according to your research need without any doubts.
Different databases used in bioinformatics
They will be able to use and know different categories of sub-databases of NCBI.
Plant and Genome Databases
Primary Databases in Bioinformatics
Secondary Databases in Bioinformatics
After this course Students will have intermediate Knowledge of UCSC Genome Browser in Bioinformatics.
Students will be able to use different tools for Sequence Analysis and will know different categories of sub-databases.
Students will be able to use different tools of UCSC for Genome Analysis.
Students will be Able to perform Genome analysis on any gene
Tools Used in Plant Databases
They will be able to use and know different categories of sub-databases of Plant Databases.
Top ten databases being used in plant bioinformatics
Different Plant databases used in bioinformatics
Complete up-to Date Beginner's Guide of top Plant Databases Used in Bioinformatics along with their utilization
You will gain concrete diffrences between Primary, Seconday and Composite database. The knowledge will help you to choose curated and reviewed data.

Who is this for?

Data Scientist are Encouraged to take this course

Researchers are also encouraged to take this Course

What You Need to Know?

Basic Understanding of Biology and Bioinformatics

Basic bioinformatics terms

Willingness to learn

More details

Description
Bioinformatics is an interdisciplinary field that combines biology, computer science, and information technology to analyze, manage, and interpret biological data. It involves the use of computational tools and techniques to store, retrieve, analyze, and predict the composition and structure of biomolecules, such as DNA, RNA, and proteins.

The main aims of bioinformatics include:

1. Development of comprehensive databases: Bioinformatics aims to create databases that contain all relevant biological information, making it easily accessible for research and analysis.

2. Improvement of data analysis tools: Bioinformatics seeks to enhance the tools used for data organization, annotation, and mining. This includes developing algorithms and software for tasks such as sequence analysis, protein structure prediction, and docking analysis.

3. Drug discovery and development: Bioinformatics plays a crucial role in the design and development of drugs. It utilizes simulation software to model and predict the interactions between drugs and biomolecules, facilitating the discovery of potential drug candidates.

4. Function prediction and annotation: Bioinformatics tools are used to predict the function of genes and proteins based on their sequence and structural characteristics. This helps in understanding the role of specific biomolecules in biological processes.

5. Sequence analysis and similarity search: Bioinformatics tools enable the analysis of biological sequences, such as DNA and protein sequences, to identify similarities, functional motifs, and evolutionary relationships.

Biological databases are essential in bioinformatics, as they provide a structured and organized repository of biological data. These databases store various types of information, including DNA and protein sequences, gene annotations, protein structures, metabolic pathways, and more. They allow researchers to retrieve, analyze, and compare biological data efficiently.

The UCSC Genome Browser is a widely used primary database browser in bioinformatics. It provides an interactive website for accessing and visualizing genome sequence data from various species, along with annotated tracks that include gene information. The UCSC Genome Browser allows researchers to explore and analyze genomic data at different scales and provides valuable insights into gene structure, regulation, and function.

In this course, you will gain a deep understanding of the UCSC Genome Browser and its applications. The focus will be on exploring the SARS-COV-2 genome as a case study. Additionally, the Table Browser, a tool within the UCSC Genome Browser, will be covered, which allows for the calculation of intersections between tracks and retrieval of DNA sequences.

The course will be divided into three parts: Introduction, Explanation, and Summary, ensuring that the content is presented in a comprehensive and accessible manner. This course is particularly beneficial for students and bioinformaticians who frequently work with biological databases and seek to enhance their skills in utilizing the UCSC Genome Browser.

Feel free to reach out to the instructor for any questions or suggestions. Your queries will be addressed within 12 hours. Get ready to explore the fascinating world of bioinformatics and the power of the UCSC Genome Browser!
Who this course is for:
Data Scientist are Encouraged to take this course
Researchers are also encouraged to take this Course

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Bioinformatics

Abdul Rehman Ikram

Instructor's Courses

My teaching skills might not be as good as experienced and professional instructors on Udemy who made handsome profits from their courses, but I am sure that I have a sincere passion to teach, to broaden my professional networks, and teach that I love to do in my bioinformatics work.My goal is to help you to understand highly complex biological data and improve your computational skills in the analysis of Genomics, Proteomics, and Transcriptomics DATA using various Bioinformatics Approaches.if you have any queries about any of my work please let me know in my Udemy inbox section I'll be happy to answer all of your questions.That was All Folks!!

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